PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00855.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 646aa    MW: 67619.8 Da    PI: 5.9547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00855.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08200244144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed+ l+ av++ G g+W+ I r      Rt+ q+  rw
        PK00855.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILRGDFkGDRTASQLSQRW 244
                      789************************984223588888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.771195252IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-13196249IPR009057Homeodomain-like
SuperFamilySSF466897.9E-12197249IPR009057Homeodomain-like
SMARTSM007177.2E-9199250IPR001005SANT/Myb domain
PfamPF002497.5E-7200244IPR001005SANT/Myb domain
CDDcd116601.94E-13201249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MVENAKKSMK GSISEEDIAT LLNRYSATAV LTLLQEVSNC QDLNIDWNAL VEKTSTGISN  60
ANEYQMLWRH LAYRQSLLEN FEDGTGAQPM DDDSDLEYEL EAFPTVSGEA LVEAAACVKV  120
LIASGASSDS IPCGSTVEAP LTINVPNGQS SKALEQPSCS IQGTNVTVPV SVQKQPVPSA  180
TIAETDLNGL ANANLQRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL  240
SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKSLTAG ATATNGSAVT  300
NSINNSAGTN GTKNSLLVTG AAEASMGGNS SFLQSQKQAQ ENLTPKPSPV VSLGLTAKPR  360
LPLKKPVLKS SPSSDAMVRA TAVAAGARIA SPSDAASLLK AAQAKNAVHI MPTGSGSIKA  420
TGAISVLSES HPNVHYIRTG LASAPLSTYS AASPIASLNS SVKSIPPAVQ HTPASNAPSS  480
DVSSKQKNDV SNTPSVSEVP LKQAVKTEEI SVSELRPATK DQIQGDRACI SSNSLGEAVK  540
ENKVALPDPK VEVNGKSDVK SLVSPMNVTT SVNDQVTVVV QPKNRVSEKD TEMMSSVAEA  600
GVTGDAVKED ADNQNIDKME EDPSSAKAAT CSEKPEIVCK EANTKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086659.10.0hypothetical protein L484_002900
TrEMBLW9QIL60.0W9QIL6_9R
STRINGVIT_18s0001g07620.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-76MYB_related family protein